PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001984-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 236aa    MW: 25869.4 Da    PI: 7.2673
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001984-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.82.9e-1179126454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++  rE+ RRdr+N++f eL ++l +    + +K +Ka+iL  Av+ + +L
  WALNUT_00001984-RA  79 SKASREKLRRDRLNDKFVELGSILEPG---RPPKTDKAAILIDAVRMVTQL 126
                         5678**********************8...89**************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.88175126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-979126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1380151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-1380148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-881132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.72E-783131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVSPENTNWL FDYDLIEDIP VTDGNFPAPN TGFSWPTQAL NGSSNASVEI DVSLGDSDGV  60
KDSGLKKRGR SESCCASSSK ASREKLRRDR LNDKFVELGS ILEPGRPPKT DKAAILIDAV  120
RMVTQLRGEA QKLKDSNSSL QEKIKELKVE KNELRDEKQR LKVEKEKLEQ QLKAMNAQPS  180
FLPAPPAIPA AFASQGQAPG NKLVPFIGYP GVAMWQFMPP AAVDTSQDHV LRPPVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16470LKKRGRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015953562.11e-143PREDICTED: transcription factor ILR3-like
SwissprotQ9FH371e-120ILR3_ARATH; Transcription factor ILR3
TrEMBLB9SA091e-138B9SA09_RICCO; DNA binding protein, putative
STRINGVIT_19s0014g05100.t011e-134(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16023486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-86bHLH family protein